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📄 Journal Article

Toward a Universal Unit for Quantification of Antibiotic Resistance Genes in Environmental Samples

June 13, 2023 167 citations 🔓 Green Environmental Science & Technology
167
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Abstract

Surveillance of antibiotic resistance genes (ARGs) has been increasingly conducted in environmental sectors to complement the surveys in human and animal sectors under the "One-Health" framework. However, there are substantial challenges in comparing and synthesizing the results of multiple studies that employ different test methods and approaches in bioinformatic analysis. In this article, we consider the commonly used quantification units (ARG copy per cell, ARG copy per genome, ARG density, ARG copy per 16S rRNA gene, RPKM, coverage, PPM, etc.) for profiling ARGs and suggest a universal unit (ARG copy per cell) for reporting such biological measurements of samples and improving the comparability of different surveillance efforts.

Publication Details
TypeJournal Article
PublishedJune 13, 2023
Source Environmental Science & Technology
PublisherAmerican Chemical Society
Volume/Issue Vol. 57 , Issue 26 , pp. 9713-9721
DOI 10.1021/acs.est.3c00159
OpenAlex ID W4380415292
Open Accessgreen Access Free PDF
Sustainable Development Goals
3 3